…sn#2076)

Fix function name according pep8

* rpacket_tracker returns dataframe

* added black formatting

* replaced variable i

* added rpacket_tracker_df as separate variable

* added preallocation step

* added non-preallocated-df generator function

* tests for df generator function

* renamed variables

* assert statements corrected

* added seed column in df

* added documentation for rpacket_tracker_df

* added doc str

* initial commit

* updated documention

* moved function to r_packet.py

* added block indexing to df

Co-authored-by: Wolfgang Kerzendorf <[email protected]>

* updated the df function

* added multiindexing

* shifted the df function call

* initial commit

* interaction type added

* removed unused imports

* added tests

* initial commit

* interaction type added

* Created a smart HDF Reader which can re-produce simulation object (#2052)

* Added functions to store and load a runner object

* Updated hardcode file name in runner_from_hdf

* Updated store_runner_to_hdf to append to file

* Added name and email to .mailmap

* runner hdf functions convert to cgs

* store_runner_to_hdf clears group before storing

* Storing units for astropy quantities

* Formatted code with black

* Added functions to store and load model objects

* Fixed typo and decoded string from bytes

* Fixed typo

* Added test for model_to_dict

* Formatted previous test code

* Added test for store_model_to_hdf

* Fixed formatting of model_to_hdf

* Fixed issue with test for model_to_dict

* Added test for runner_to_dict

* Fixed issue with single packet seed storage

* Updated test null value of single packet seed

* Added test for store_runner_to_hdf

* Updated to use isinstance and hasattr

* runner_to_dict returns dicts instead of iterators

* Reordered imports to match pep8 style

* Remove yaml_load_config_file (#2062)

* Remove yaml_load_config_file

* updated mailmap

* Updated __init__.py

* Modified Function Name in Config validator according to PEP8 (#2076)

Fix function name according pep8

* Added documetation on how to compare environment before update (#2082)

* Moved `trace_packet` to tardis tansport (#2083)

* Moved the trace_packet function to the transport module, renamed the function to remove continuum reference as it is generic

* Formatted to PEP 8

* Reformatted single_packet_loop for PEP 8

* removed old continuum trace packet files

* removed references to old files

* Added some docstrings

* Missed an old function call

* Fix broken links in workflow files and goverance md (#2084)

* Adding physics introduction to documentation (#2026)

* creating files and sections

* adding images

* writing intro to tardis physics and adding it to sidebar

* changing spectra page structure

* mostly complete draft of light and matter page

* spectrum page

* fixing up physics stuff

* fixing docstring

* Revert "fixing docstring"

This reverts commit e24cadd.

* andrew's changes

* a few more edits

* adding note about angstroms

* Improved arepo parser (#1941)

* Removed line profile as option

* Removed mapping to Cartesian grid

* Removed automatic plotting after profile creation

* Fixed typo in arepo plot

* Updated documentation

* [build docs]

* [build docs] Removed outputs from doc-notebook

* Updated tests with new models

* Removed deprecated keyword in snapshot loader

* Replaced wget with requests for testfile download

* Updated file retrieval for testing

* Fixed fixture request

* Added arepo data to refdata helper

* Updated refdata location in docs

* Updated paths in tests

* Update download_reference_data.sh

* Testing areop_parser_tests

* Fixed deleted reference file

* Arepo docs fix (#2088)

* [build-docs] Fixed link in arepo docs

* [build-docs] Changed filename in arepo docs

* [build-docs]

* [build-docs]

* [build-docs]

* [build docs]

* [build-docs] Changed refdata url

* [build_docs]

* Updated mailmap

* [build_docs] Updated url for refdata download

* Creating new docs building instructions (#2097)

* creating new docs building instructions

* typos, grammar, and text in hyperlinks

* added tests

* added documentation, black formatting

Co-authored-by: Wolfgang Kerzendorf <[email protected]>
Co-authored-by: Satwik Kambham <[email protected]>
Co-authored-by: aman kumar <[email protected]>
Co-authored-by: Rohith Varma Buddaraju <[email protected]>
Co-authored-by: Jaladh Singhal <[email protected]>
Co-authored-by: Jack O'Brien <[email protected]>
Co-authored-by: Isaac Smith <[email protected]>
Co-authored-by: AlexHls <[email protected]>